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Index

A

add() (cosmoHammer.ChainContext method) (cosmoHammer.ChainContext.ChainContext method), [1] addCoreModule() (cosmoHammer.LikelihoodComputationChain method) (cosmoHammer.LikelihoodComputationChain.LikelihoodComputationChain method), [1]

addLikelihoodModule() (cosmoHammer.LikelihoodComputationChain method) (cosmoHammer.LikelihoodComputationChain.LikelihoodComputationChain method), [1]

B

BEST_FILE_NAME (cosmoHammer.pso.BestFitPositionGenerator.BestFitPositionGenerator attribute), [1] BEST_INFO_FILE_NAME (cosmoHammer.pso.BestFitPositionGenerator.BestFitPositionGenerator attribute), [1]

BestFitPositionGenerator (class in cosmoHammer.pso.BestFitPositionGenerator), [1] bound() (in module cosmoHammer.pso.CurvatureFitter), [1]

C

ChainContext (class in cosmoHammer) (class in cosmoHammer.ChainContext), [1] close() (cosmoHammer.util.SampleFileUtil.SampleFileUtil method), [1] computeLikelihood() (cosmoHammer.modules.MultivarianteGaussianModule.MultivarianteGaussianModule method), [1] (cosmoHammer.modules.PseudoCmbModule.PseudoCmbModule method), [1] (cosmoHammer.modules.RosenbrockModule.RosenbrockModule method), [1] computeLikelihoods() (cosmoHammer.LikelihoodComputationChain method) (cosmoHammer.LikelihoodComputationChain.LikelihoodComputationChain method), [1] ConcurrentMpiCosmoHammerSampler (class in cosmoHammer) (class in cosmoHammer.ConcurrentMpiCosmoHammerSampler), [1] contains() (cosmoHammer.ChainContext method) (cosmoHammer.ChainContext.ChainContext method), [1] copy() (cosmoHammer.pso.ParticleSwarmOptimizer.Particle method), [1] (cosmoHammer.util.Params.Params method), [1] corr2cov() (in module cosmoHammer.pso.CurvatureFitter), [1] cosmoHammer (module), [1], [2] cosmoHammer.ChainContext (module), [1] cosmoHammer.ConcurrentMpiCosmoHammerSampler (module), [1] cosmoHammer.Constants (module), [1] cosmoHammer.CosmoHammerSampler (module), [1] cosmoHammer.exceptions (module), [1], [2] cosmoHammer.LikelihoodComputationChain (module), [1] cosmoHammer.modules (module), [1] cosmoHammer.modules.MultivarianteGaussianModule (module), [1] cosmoHammer.modules.PseudoCmbModule (module), [1] cosmoHammer.modules.RosenbrockModule (module), [1] cosmoHammer.MpiCosmoHammerSampler (module), [1] cosmoHammer.pso (module), [1] cosmoHammer.pso.BestFitPositionGenerator (module), [1]

cosmoHammer.pso.CurvatureFitter (module), [1] cosmoHammer.pso.MpiParticleSwarmOptimizer (module), [1] cosmoHammer.pso.ParticleSwarmOptimizer (module), [1] cosmoHammer.util (module), [1] cosmoHammer.util.FlatPositionGenerator (module), [1] cosmoHammer.util.InMemoryStorageUtil (module), [1] cosmoHammer.util.IterationStopCriteriaStrategy (module), [1] cosmoHammer.util.MpiUtil (module), [1] cosmoHammer.util.Params (module), [1] cosmoHammer.util.SampleBallPositionGenerator (module), [1] cosmoHammer.util.SampleFileUtil (module), [1] CosmoHammerSampler (class in cosmoHammer) (class in cosmoHammer.CosmoHammerSampler), [1] create() (cosmoHammer.pso.ParticleSwarmOptimizer.Particle class method), [1] createChainContext() (cosmoHammer.LikelihoodComputationChain method) (cosmoHammer.LikelihoodComputationChain.LikelihoodComputationChain method), [1] createEmceeSampler() (cosmoHammer.CosmoHammerSampler method) (cosmoHammer.CosmoHammerSampler.CosmoHammerSampler method), [1] createInitPos() (cosmoHammer.CosmoHammerSampler method) (cosmoHammer.CosmoHammerSampler.CosmoHammerSampler method), [1] (cosmoHammer.MpiCosmoHammerSampler.MpiCosmoHammerSampler method), [1] createInitPositionGenerator() (cosmoHammer.CosmoHammerSampler method) (cosmoHammer.CosmoHammerSampler.CosmoHammerSampler method), [1] createSampleFileUtil() (cosmoHammer.CosmoHammerSampler method) (cosmoHammer.CosmoHammerSampler.CosmoHammerSampler method), [1] (cosmoHammer.MpiCosmoHammerSampler.MpiCosmoHammerSampler method), [1] createStopCriteriaStrategy() (cosmoHammer.CosmoHammerSampler method) (cosmoHammer.CosmoHammerSampler.CosmoHammerSampler method), [1] CurvatureFitter (class in cosmoHammer.pso.CurvatureFitter), [1]

E

errfunc() (in module cosmoHammer.pso.CurvatureFitter), [1]

errfunc2() (in module cosmoHammer.pso.CurvatureFitter), [1]

F

finalize() (cosmoHammer.util.SampleFileUtil.SampleFileUtil method), [1] fit() (cosmoHammer.pso.CurvatureFitter.CurvatureFitter method), [1]

FlatPositionGenerator (class in cosmoHammer.util) (class in cosmoHammer.util.FlatPositionGenerator), [1]

G

generate() (cosmoHammer.pso.BestFitPositionGenerator.BestFitPositionGenerator method), [1] (cosmoHammer.util.FlatPositionGenerator method) (cosmoHammer.util.FlatPositionGenerator.FlatPositionGenerator method), [1] (cosmoHammer.util.SampleBallPositionGenerator method) (cosmoHammer.util.SampleBallPositionGenerator.SampleBallPositionGenerator method), [1] get() (cosmoHammer.ChainContext method) (cosmoHammer.ChainContext.ChainContext method), [1] (cosmoHammer.util.Params.Params method), [1] get_particle_count() (cosmoHammer.pso.BestFitPositionGenerator.BestFitPositionGenerator method), [1] getChain() (cosmoHammer.CosmoHammerSampler method) (cosmoHammer.CosmoHammerSampler.CosmoHammerSampler method), [1]

getCoreModules() (cosmoHammer.LikelihoodComputationChain method) (cosmoHammer.LikelihoodComputationChain.LikelihoodComputationChain method), [1] getData() (cosmoHammer.ChainContext method) (cosmoHammer.ChainContext.ChainContext method), [1] getLikelihoodModules() (cosmoHammer.LikelihoodComputationChain method) (cosmoHammer.LikelihoodComputationChain.LikelihoodComputationChain method), [1] getLogger() (in module cosmoHammer), [1] getParams() (cosmoHammer.ChainContext method) (cosmoHammer.ChainContext.ChainContext method), [1] getParent() (cosmoHammer.ChainContext method) (cosmoHammer.ChainContext.ChainContext method), [1]

H

hasFinished() (cosmoHammer.util.IterationStopCriteriaStrategy.IterationStopCriteriaStrategy method), [1]

I

importFromFile() (cosmoHammer.util.InMemoryStorageUtil.InMemoryStorageUtil method), [1] (cosmoHammer.util.SampleFileUtil.SampleFileUtil method), [1] importRandomState() (cosmoHammer.util.InMemoryStorageUtil.InMemoryStorageUtil method), [1] (cosmoHammer.util.SampleFileUtil.SampleFileUtil method), [1] InMemoryStorageUtil (class in cosmoHammer.util) (class in cosmoHammer.util.InMemoryStorageUtil), [1] InvalidLikelihoodException, [1], [2] invokeCoreModule() (cosmoHammer.LikelihoodComputationChain method) (cosmoHammer.LikelihoodComputationChain.LikelihoodComputationChain method), [1] invokeCoreModules() (cosmoHammer.LikelihoodComputationChain method) (cosmoHammer.LikelihoodComputationChain.LikelihoodComputationChain method), [1]

invokeLikelihoodModule() (cosmoHammer.LikelihoodComputationChain method) (cosmoHammer.LikelihoodComputationChain.LikelihoodComputationChain method), [1] isMaster() (cosmoHammer.CosmoHammerSampler method) (cosmoHammer.CosmoHammerSampler.CosmoHammerSampler method), [1] (cosmoHammer.MpiCosmoHammerSampler.MpiCosmoHammerSampler method), [1] (cosmoHammer.pso.MpiParticleSwarmOptimizer.MpiParticleSwarmOptimizer method), [1] (cosmoHammer.pso.ParticleSwarmOptimizer.ParticleSwarmOptimizer method), [1] (cosmoHammer.util.MpiUtil.MpiPool method), [1] isValid() (cosmoHammer.LikelihoodComputationChain method) (cosmoHammer.LikelihoodComputationChain.LikelihoodComputationChain method), [1] IterationStopCriteriaStrategy (class in cosmoHammer.util.IterationStopCriteriaStrategy), [1]

K

keys (cosmoHammer.util.Params.Params attribute), [1]

L

LikelihoodComputationChain (class in cosmoHammer) (class in cosmoHammer.LikelihoodComputationChain), [1] LikelihoodComputationException, [1], [2] loadBurnin() (cosmoHammer.CosmoHammerSampler method) (cosmoHammer.CosmoHammerSampler.CosmoHammerSampler method), [1] (cosmoHammer.MpiCosmoHammerSampler.MpiCosmoHammerSampler method), [1]

log() (cosmoHammer.CosmoHammerSampler method) (cosmoHammer.CosmoHammerSampler.CosmoHammerSampler method), [1]

M

map() (cosmoHammer.util.MpiUtil.MpiPool method), [1] MAX_PSO_ITER (cosmoHammer.pso.BestFitPositionGenerator.BestFitPositionGenerator attribute), [1] mergeList() (in module cosmoHammer.util.MpiUtil), [1] MIN_PARTICLE_COUNT (cosmoHammer.pso.BestFitPositionGenerator.BestFitPositionGenerator attribute), [1] minimize1() (cosmoHammer.pso.CurvatureFitter.CurvatureFitter method), [1] minimize2() (cosmoHammer.pso.CurvatureFitter.CurvatureFitter method), [1]

mpiBCast() (in module cosmoHammer.util.MpiUtil), [1] MpiCosmoHammerSampler (class in cosmoHammer) (class in cosmoHammer.MpiCosmoHammerSampler), [1] MpiParticleSwarmOptimizer (class in cosmoHammer) (class in cosmoHammer.pso.MpiParticleSwarmOptimizer), [1] MpiPool (class in cosmoHammer.util.MpiUtil), [1] MultivarianteGaussianModule (class in cosmoHammer.modules.MultivarianteGaussianModule), [1]

O

optimize() (cosmoHammer.ParticleSwarmOptimizer method) (cosmoHammer.pso.ParticleSwarmOptimizer.ParticleSwarmOptimizer method), [1]

P

parabola() (in module cosmoHammer.pso.CurvatureFitter), [1] Params (class in cosmoHammer.util) (class in cosmoHammer.util.Params), [1] paramValues (cosmoHammer.CosmoHammerSampler.CosmoHammerSampler attribute), [1] paramWidths (cosmoHammer.CosmoHammerSampler.CosmoHammerSampler attribute), [1] Particle (class in cosmoHammer.pso.ParticleSwarmOptimizer), [1] ParticleSwarmOptimizer (class in cosmoHammer) (class in cosmoHammer.pso.ParticleSwarmOptimizer), [1]

persistBurninValues() (cosmoHammer.util.InMemoryStorageUtil.InMemoryStorageUtil method), [1] (cosmoHammer.util.SampleFileUtil.SampleFileUtil method), [1] persistSamplingValues() (cosmoHammer.util.InMemoryStorageUtil.InMemoryStorageUtil method), [1] (cosmoHammer.util.SampleFileUtil.SampleFileUtil method), [1] persistValues() (cosmoHammer.util.SampleFileUtil method) (cosmoHammer.util.SampleFileUtil.SampleFileUtil method), [1] PseudoCmbModule (class in cosmoHammer.modules.PseudoCmbModule), [1]

R

remove() (cosmoHammer.ChainContext method) (cosmoHammer.ChainContext.ChainContext method), [1] rescale() (in module cosmoHammer.pso.CurvatureFitter), [1]

resetSampler() (cosmoHammer.CosmoHammerSampler method) (cosmoHammer.CosmoHammerSampler.CosmoHammerSampler method), [1] reverse() (in module cosmoHammer.pso.CurvatureFitter), [1] RosenbrockModule (class in cosmoHammer.modules.RosenbrockModule), [1]

S

sample() (cosmoHammer.CosmoHammerSampler method) (cosmoHammer.CosmoHammerSampler.CosmoHammerSampler method), [1] (cosmoHammer.MpiCosmoHammerSampler.MpiCosmoHammerSampler method), [1] (cosmoHammer.ParticleSwarmOptimizer method) (cosmoHammer.pso.ParticleSwarmOptimizer.ParticleSwarmOptimizer method), [1] SampleBallPositionGenerator (class in cosmoHammer.util) (class in cosmoHammer.util.SampleBallPositionGenerator), [1] sampleBurnin() (cosmoHammer.CosmoHammerSampler method) (cosmoHammer.CosmoHammerSampler.CosmoHammerSampler method), [1] (cosmoHammer.MpiCosmoHammerSampler.MpiCosmoHammerSampler method), [1] SampleFileUtil (class in cosmoHammer.util) (class in cosmoHammer.util.SampleFileUtil), [1] setup() (cosmoHammer.LikelihoodComputationChain method) (cosmoHammer.LikelihoodComputationChain.LikelihoodComputationChain method), [1] (cosmoHammer.modules.MultivarianteGaussianModule.MultivarianteGaussianModule method), [1] (cosmoHammer.modules.PseudoCmbModule.PseudoCmbModule method), [1] (cosmoHammer.modules.RosenbrockModule.RosenbrockModule method), [1] (cosmoHammer.pso.BestFitPositionGenerator.BestFitPositionGenerator method), [1] (cosmoHammer.util.FlatPositionGenerator method) (cosmoHammer.util.FlatPositionGenerator.FlatPositionGenerator method), [1] (cosmoHammer.util.IterationStopCriteriaStrategy.IterationStopCriteriaStrategy method), [1] (cosmoHammer.util.SampleBallPositionGenerator method) (cosmoHammer.util.SampleBallPositionGenerator.SampleBallPositionGenerator method), [1]

splitList() (in module cosmoHammer.util.MpiUtil), [1] startSampleBurnin() (cosmoHammer.CosmoHammerSampler method) (cosmoHammer.CosmoHammerSampler.CosmoHammerSampler method), [1] startSampling() (cosmoHammer.CosmoHammerSampler method) (cosmoHammer.CosmoHammerSampler.CosmoHammerSampler method), [1] storeRandomState() (cosmoHammer.util.InMemoryStorageUtil.InMemoryStorageUtil method), [1] (cosmoHammer.util.SampleFileUtil.SampleFileUtil method), [1]

T

transform() (in module cosmoHammer.pso.CurvatureFitter), [1]

U

updatePBest() (cosmoHammer.pso.ParticleSwarmOptimizer.Particle method), [1]

V

values (cosmoHammer.util.Params.Params attribute), [1]